Thursday, May 5, 2011

Theory

Infrared spectroscopy exploits the fact that molecules absorb specific frequencies that are characteristic of their structure. These absorptions are resonant frequencies, i.e. the frequency of the absorbed radiation matches the frequency of the bond or group that vibrates. The energies are determined by the shape of the molecular potential energy surfaces, the masses of the atoms, and the associated vibronic coupling.

In particular, in the Born–Oppenheimer and harmonic approximations, i.e. when the molecular Hamiltonian corresponding to the electronic ground state can be approximated by a harmonic oscillator in the neighborhood of the equilibrium molecular geometry, the resonant frequencies are determined by the normal modes corresponding to the molecular electronic ground state potential energy surface. Nevertheless, the resonant frequencies can be in a first approach related to the strength of the bond, and the mass of the atoms at either end of it. Thus, the frequency of the vibrations can be associated with a particular bond type.

Number of vibrational modes

In order for a vibrational mode in a molecule to be "IR active," it must be associated with changes in the permanent dipole.

A molecule can vibrate in many ways, and each way is called a vibrational mode. For molecules with N atoms in them, linear molecules have 3N – 5 degrees of vibrational modes, whereas nonlinear molecules have 3N – 6 degrees of vibrational modes (also called vibrational degrees of freedom). As an example H2O, a non-linear molecule, will have 3 × 3 – 6 = 3 degrees of vibrational freedom, or modes.

Simple diatomic molecules have only one bond and only one vibrational band. If the molecule is symmetrical, e.g. N2, the band is not observed in the IR spectrum, but only in the Raman spectrum. Unsymmetrical diatomic molecules, e.g. CO, absorb in the IR spectrum. More complex molecules have many bonds, and their vibrational spectra are correspondingly more complex, i.e. big molecules have many peaks in their IR spectra.

The atoms in a CH2 group, commonly found in organic compounds, can vibrate in six different ways: symmetric and antisymmetric stretching, scissoring, rocking, wagging and twisting:

Symmetrical
stretching
Antisymmetrical
stretching
Scissoring
Symmetrical stretching.gif Asymmetrical stretching.gif Scissoring.gif
Rocking Wagging Twisting
Modo rotacao.gif Wagging.gif Twisting.gif

(These figures do not represent the "recoil" of the C atoms, which, though necessarily present to balance the overall movements of the molecule, are much smaller than the movements of the lighter H atoms).

Special effects

The simplest and most important IR bands arise from the "normal modes," the simplest distortions of the molecule. In some cases, "overtone bands" are observed. These bands arise from the absorption of a photon that leads to a doubly excited vibrational state. Such bands appear at approximately twice the energy of the normal mode. Some vibrations, so-called 'combination modes," involve more than one normal mode. The phenomenon of Fermi resonance can arise when two modes are similar in energy, Fermi resonance results in an unexpected shift in energy and intensity of the bands.

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